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pamR [2018-04-23 15:18:15]
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pamR [2018-04-23 15:18:15]

MarR-type transcription factor
Locus
BSU04770
Isoelectric point
9.36
Molecular weight
16.49 kDa
Protein length
147 aa Sequence Blast
Gene length
441 bp Sequence Blast
Function
control of the ydcF-ydcG-pamR operon
Product
MarR-type transcription factor
Essential
no
Synonyms
ydcH
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Information processing → Regulation of gene expression → Transcription factors and their control → Transcription factors/ other

    • Gene

    Coordinates
    525,206 → 525,649

    The protein

    Protein family

  • MarR family

    • Structure

  • 3BPX (MarR from Methanothermobacter thermautotrophicus, 28% identity, aa 29 - 137) PubMed

    • Expression and Regulation

    Operons

    Genes
    ydcF-ydcG-pamR
    Description
    PubMed

    Regulatory mechanism

  • PamR: repression, PubMed, in PamR regulon
    • view in new tab

    Genes
    ydcG-pamR
    Description
    PubMed

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C096 (ydcH::erm), available at the NBRP B. subtilis, Japan
  • BKE04770 (ΔpamR::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC, downstream forward: _UP4_TAAAGATACGGGCAGCGCCA
  • BKK04770 (ΔpamR::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CGGGCTTGTGTTCGGACCGC, downstream forward: _UP4_TAAAGATACGGGCAGCGCCA

    • References

    Research papers

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